PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AS_937121AF8.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 59aa    MW: 7144.26 Da    PI: 10.9795
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AS_937121AF8.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind67.82.3e-2115341102
                            HHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
           HSF_DNA-bind  41 LpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102
                            LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+k+ll++i+r+k 
  Traes_7AS_937121AF8.1   1 LPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGEKRLLCDIHRRKV 53 
                            89*************************99.........**********************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.4E-20146IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.1E-17151IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE patternPS004340125IPR000232Heat shock factor (HSF)-type, DNA-binding
SMARTSM004151.4E-13151IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.3E-18151IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 59 aa     Download sequence    Send to blast
LPKYFKHNNF SSFVRQLNTY GFRKIVPDRW EFANDCFRRG EKRLLCDIHR RKVTPTVAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-1515459122Heat shock factor protein 1
5d5u_B4e-1515468131Heat shock factor protein 1
5d5v_B4e-1515468131Heat shock factor protein 1
5d5v_D4e-1515468131Heat shock factor protein 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ7717554e-94JQ771755.1 Triticum aestivum HSF3 mRNA, complete cds.
GenBankKP0635424e-94KP063542.1 Triticum aestivum heat-responsive transcription factor (HSF-2) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008680871.12e-35PREDICTED: heat shock factor protein 7 isoform X1
SwissprotQ652B01e-35HFB2C_ORYSJ; Heat stress transcription factor B-2c
TrEMBLF2EA611e-39F2EA61_HORVD; Predicted protein
TrEMBLM0Z0T01e-39M0Z0T0_HORVD; Uncharacterized protein
STRINGMLOC_75166.44e-39(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.13e-31HSF family protein